ژنومیک محیطی میکروبی Microbial Environmental Genomics (MEG)

فهرست مطالب: Preface . . . . . . . . . . . . . . v Contributors. . . . . . . . . . . . . . . ix 1 Metabarcoding Approaches for Soil Eukaryotes, Protists, and Microfauna . . . . . . . . . . . . 1 Guillaume Lentendu, Enrique Lara, and Stefan Geisen 2 Metabarcoding of the Three Domains of Life in Aquatic Saline Ecosystems . . . . . . . . . . 17 Delphine Melayah, Ze´lia Bontemps, Maxime Bruto, Agne`s Nguyen, Philippe Oger, and Myle`ne Hugoni 3 Sample Preparation for Fungal Community Analysis by High-Throughput Sequencing of Barcode Amplicons . . . . . . . . . . 37 Karina E. Clemmensen, Katarina Ihrmark, Mikael Brandstro ¨m Durling, and Bjo ¨rn D. Lindahl 4 Characterization of Seed Mycobiota Using Culture-Dependent and Culture-Independent Approaches . . . . . . . 65 Gillian E. Bergmann, Sabrina J. Heitmann, Posy E. Busby, and Johan H. J. Leveau 5 Tissue Cultivation, Preparation, and Extraction of High Molecular Weight DNA for Single-Molecule Genome Sequencing of Plant-Associated Fungi . . . . . . . . 79 Laure Fauchery, Maxim Koriabine, Lillian P. Moore, Yuko Yoshinaga, Kerrie Barry, Annegret Kohler, and Jana M. U’Ren 6 Analysis of Ancient Microbial DNA . . . . . . . . . 103 Olivier Gorge´, E. Andrew Bennett, Diyendo Massilani, Julien Daligault, Eva-Maria Geigl, and Thierry Grange 7 Whole-Genome Sequencing of Bacterial Endophytes From Fresh and Preserved Plant Specimens . . . . . . . . 133 Bram Danneels and Aure´lien Carlier 8 Investigating the Bacterial and Fungal Communities Involved in Dead Biomass Degradation in Forest Soils . . . . . . 157 Martina Sˇtursova´, Ruben Lopez-Monde´jar, and Petr Baldrian 9 Stable Isotope Probing-RNA Strategy to Study Plant/Fungus Interactions . . . . . . . . . . 169 Amandine Leˆ Van, Marie Duhamel, Achim Quaiser, and Philippe Vandenkoornhuyse 10 Targeted 16S rRNA Gene Capture by Hybridization and Bioinformatic Analysis . . . . . . . . . . . . 187 Sophie Comtet-Marre, Oshma Chakoory, and Pierre Peyret vii viii Contents 11 Construction of a Transposon Mutant Library in the Pathogen Agrobacterium tumefaciens C58 and Identification of Genes Involved in Gall Niche Exploitation and Colonization. . . . . . . . 209 Marta Torres, Almudena Gonzalez-Mula, Delphine Naquin, and Denis Faure 12 High-Throughput Screening of Fosmid Libraries for Increased Identification of Novel N-Acyl Homoserine Lactone Degrading Enzymes . . . 227 Stephane Uroz and Philippe Oger 13 Analyzing Prokaryotic Transcriptomics in the Light of Genome Data with the MicroScope Platform. . . . . . . . . 241 David Roche, Alexandra Calteau, and David Vallenet 14 MycoCosm, the JGI’s Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses . . . . . . . . . . 271 Steven R. Ahrendt, Stephen J. Mondo, Sajeet Haridas, and Igor V. Grigoriev 15 Investigating Endobacteria that Thrive Within Mucoromycota . . . . . 293 Alessandro Desiro`, Yusuke Takashima, Gregory Bonito, Tomoyasu Nishizawa, Kazuhiko Narisawa, and Paola Bonfante 16 Confocal Laser Scanning Microscopy Approach to Investigate Plant–Fungal Interactions. . . . . . . . 325 F. Fracchia, V. Basso, F. Guinet, C. Veneault-Fourrey, and Aure´lie Deveau 17 Visualization of Fungi During Wood Colonization and Decomposition by Microscopy: From Light to Electron Microscopy . . . . 337 Arnaud Besserer, Christophe Rose, and Aure´lie Deveau Index . . . . . . . . . . . . . . . 363   مشخصات فایل
عنوان (Title):	Microbial Environmental Genomics (MEG)
نام فایل (File name):	994-www.GeneProtocols.ir-Microbial Environmental Genomics (MEG)-Humana Press (2023).pdf
عنوان فارسی (Title in Persian):	ژنومیک محیطی میکروبی
ایجاد کننده:	Francis Martin, Stephane Uroz
زبان (Language):	انگلیسی English
سال انتشار:	2023
شابک ISBN:	9781071628706
نوع سند (Doc. type):	کتاب
فرمت (File extention):	PDF
حجم فایل (File size):	13.9 مگابایت
تعداد صفحات (Book length in pages):	370

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