کاربردهای عملی زیست شناسی محاسباتی و بیوانفورماتیک Practical Applications of Computational Biology & Bioinformatics2020

فهرست مطالب: Contents ProtRet: A Web Server for Retrieving Proteins in a Functional Complex . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 Proposal of a New Bioinformatics Pipeline for Metataxonomics in Precision Medicine . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8 Systems Toxicology Approach to Unravel Early Indicators of Squamous Cell Carcinoma Rate in Rat Nasal Epithelium Induced by Formaldehyde Exposure . . . . . . . . . . . . . . . . . . . . . . . . . . . 16 Moment Vector Encoding of Protein Sequences for Supervised Classification . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 25 A Hybrid of Particle Swarm Optimization and Minimization of Metabolic Adjustment for Ethanol Production of Escherichia Coli . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 36 Cache-Efficient FM-Index Variants for Mapping of DNA Sequences . . . 45 A Parallel Implementation for Cellular Potts Model with Software Transactional Memory . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 53 Inferring Positive Selection in Large Viral Datasets . . . . . . . . . . . . . . . .       61 Data-Driven Extraction of Quantitative Multi-dimensional Associations of Cardiovascular Drugs and Adverse Drug Reactions . . . An Identical String Motif Finding Algorithm Through Dynamic Programming . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .            70 78           Parallel Density-Based Downsampling of Cytometry Data . . . . . . . . . . . Signaling Transduction Networks in Choroidal Melanoma: A Symbolic Model Approach . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .          87 96           Predicting Promoters in Phage Genomes Using Machine Learning Models . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 105 Detection and Characterization of Local Inverted Repeats Regularities . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 113 An Efficient and User-Friendly Implementation of the Founder Analysis Methodology . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 121 Visualization of Similar Primer and Adapter Sequences in Assembled Archaeal Genomes . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 129 GeCo2: An Optimized Tool for Lossless Compression and Analysis of DNA Sequences . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 137 Troppo - A Python Framework for the Reconstruction of Context-Specific Metabolic Models . . . . . . . . . . . . . . . . . . . . . . . . . . . 146 Deterministic Classifiers Accuracy Optimization for Cancer Microarray Data . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 154 Artificial Intelligence in Biological Activity Prediction . . . . . . . . . . . . . . 164 Towards the Reconstruction of Integrated Genome-Scale Models of Metabolism and Gene Expression . . . . . . . . . . . . . . . . . . . . . . . . . . . 173 Author Index. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 183 مشخصات فایل
عنوان (Title):	Practical Applications of Computational Biology & Bioinformatics
نام فایل (File name):	623-www.GeneProtocols.ir-Practical Applications of Computational Biology and Bioi.pdf
عنوان فارسی (Title in Persian):	کاربردهای عملی زیست شناسی محاسباتی و بیوانفورماتیک
ایجاد کننده:	Florentino Fdez-Riverola, Miguel Rocha, Mohd Saberi Mohamad, Nazar Zaki, José A. Castellanos-Garzón
زبان (Language):	انگلیسی English
سال انتشار:	2020
شابک ISBN:	978-3-030-23872-8;978-3-030-23873-5
نوع سند (Doc. type):	کتاب
فرمت (File extention):	PDF
حجم فایل (File size):	11/9
تعداد صفحات (Book length in pages):	198

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